---
Type: desktop-application
ID: seaview.desktop
Package: seaview
Name:
C: SeaView
Summary:
fr: Édite des aligmements multiples de séquences et les imprime au format PostScript.
C: Edits multiple sequence alignments and prints them in PostScript format.
pt-BR: Edita múltiplos alinhamentos de seqüências e os imprimem em formato PostScript.
en: Edits multiple sequence alignments and prints them in PostScript format.
Description:
C: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in
their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the
same biochemical property.</p>
<p>SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein
sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega
for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ
or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.</p>
<p>SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt
using the Internet.</p>
en: >-
<p>SeaView is a viewer and editor of multiple sequence alignments, i.e. DNA or protein sequences are positioned each in
their own separate line, such that the nucleotide/amino acid at a particular position (column) is presumed to have the
same biochemical property.</p>
<p>SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein
sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal Omega
for multiple sequence alignment, and also allows one to use any external alignment algorithm able to read and write FASTA-formatted
files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ
or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0.</p>
<p>SeaView draws phylogenetic trees on screen or PostScript files, and allows one to download sequences from EMBL/GenBank/UniProt
using the Internet.</p>
Categories:
- Biology
- Science
- Education
Keywords:
C:
- genomics
Icon:
cached:
- name: seaview_seaview.png
width: 48
height: 48
- name: seaview_seaview.png
width: 64
height: 64
- name: seaview_seaview.png
width: 128
height: 128
remote:
- url: s/se/seaview.desktop/dd884557a79b9ff9a51fa4d21640dc5f/icons/128x128/seaview_seaview.png
width: 128
height: 128
stock: seaview
Launchable:
desktop-id:
- seaview.desktop
Provides:
mediatypes:
- text/x-clustalw-alignment
